Version 1.13 Sept. 9, 2024
We released a new schedule version!
Version 1.12 Sept. 9, 2024
We released a new schedule version!
Version 1.11 Sept. 9, 2024
We released a new schedule version!
We have a new session: “Poster Session II @ Hof 5” .
Version 1.10 Sept. 9, 2024
We released a new schedule version!
We sadly had to cancel a session: “Combinator: A Semi-Supervised Trajectory Inference Algorithm to Track Rare Cell State Transitions in scRNAseq Data” by Shyam.
We had to move some sessions, so if you were planning on seeing them, check their new dates or locations:
- “Integrative Analysis of Tumor Microenvironment Dynamics in Response to Immune Checkpoint Inhibition” by Zhongyang Lin (Sept. 10, 2024, 2:51 p.m. → Sept. 10, 2024, 2:58 p.m.)
- “Spatialproteomics - Streamlining spatial proteomics analysis” by Matthias Meyer-Bender (Sept. 10, 2024, 2:57 p.m. → Sept. 10, 2024, 3:04 p.m.)
- “Deciphering Intra-Tumoral Heterogeneity and Metastatic Processes in Pancreatic Ductal Adenocarcinoma Using In Situ Sequencing” by Johannes Wirth (Sept. 10, 2024, 2:48 p.m. → Sept. 10, 2024, 2:55 p.m.)
- “High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in colorectal cancer” by Valentin Marteau (Sept. 10, 2024, 2:45 p.m. → Sept. 10, 2024, 2:55 p.m.)
- “Heartbreaking - Resolving Myocardial Infarction at Subcellular Resolution” by Paul Kiessling (Sept. 10, 2024, 3:03 p.m. → Sept. 10, 2024, 3:07 p.m.)
- “SCleeStacks: modality-organized images for containerized development, execution, and analysis” by Chris Tastad (Sept. 10, 2024, 2:54 p.m. → Sept. 10, 2024, 3:01 p.m.)
Version 1.9 Sept. 8, 2024
We released a new schedule version!
We have moved a session around: “Poster session I @ Hof 5” (Hof 5 → Main conference room - MW 0350)
Version 1.8 Sept. 8, 2024
We released a new schedule version!
We have moved a session around: “Poster session I @ Hof 5” (Main conference room - MW 0350 → Hof 5)
Version 1.7 Sept. 8, 2024
We released a new schedule version!
We sadly had to cancel a session: “BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis” by Vipul Singhal, Joseph Lee.
We had to move some sessions, so if you were planning on seeing them, check their new dates or locations:
- “Single-cell analysis - dos and don'ts in trajectory inference” by Roshan Sharma (Sept. 11, 2024, 3:45 p.m. → Sept. 11, 2024, 5 p.m.)
- “Avoiding common pitfalls in single-cell analysis – hands-on guide through preprocessing, annotation, and differential expression.” by Mark Sanborn (Sept. 11, 2024, 5 p.m. → Sept. 11, 2024, 3:45 p.m.)
Version 1.6 Sept. 7, 2024
We released a new schedule version!
We have a new session: “Avoiding common pitfalls in single-cell analysis – hands-on guide through preprocessing, annotation, and differential expression.” by Mark Sanborn .
Version 1.5 Sept. 7, 2024
We released a new schedule version!
We had to move some sessions, so if you were planning on seeing them, check their new dates or locations:
- “Many anecdotes make a novel? Study-centered analysis and training models” by Alex Wolf (Sept. 10, 2024, 10:15 a.m. → Sept. 11, 2024, 1:30 p.m.)
- “Upstream of the single-cell data deluge: On the importance of accurate, efficient, and open methods for preprocessing single-cell data” by Rob Patro (Sept. 10, 2024, 1:30 p.m. → Sept. 10, 2024, 10:15 a.m.)
- “Multimodal Atlas for Biological Data Analysis and Drug Discovery” by Angela Oliveira Pisco (Sept. 11, 2024, 1:30 p.m. → Sept. 10, 2024, 1:30 p.m.)
Version 1.4 Aug. 27, 2024
We released a new schedule version!
We sadly had to cancel a session: “Identifying retinal ganglion cell types” by Paulina Paiz.
We had to move some sessions, so if you were planning on seeing them, check their new dates or locations:
- “BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis” by Vipul Singhal, Joseph Lee (Sept. 10, 2024, 3:06 p.m. → Sept. 10, 2024, 3 p.m.)
- “SCleeStacks: modality-organized images for containerized development, execution, and analysis” by Chris Tastad (Sept. 10, 2024, 3 p.m. → Sept. 10, 2024, 2:54 p.m.)
- “Combinator: A Semi-Supervised Trajectory Inference Algorithm to Track Rare Cell State Transitions in scRNAseq Data” by Shyam (Sept. 10, 2024, 3:18 p.m. → Sept. 10, 2024, 3:06 p.m.)
- “Novae: a graph-based foundation model for spatial transcriptomics data” by Quentin (Sept. 10, 2024, 2:57 p.m. → Sept. 12, 2024, 12:15 p.m.)
- “Spatialproteomics - Streamlining spatial proteomics analysis” by Matthias Meyer-Bender (Sept. 10, 2024, 3:03 p.m. → Sept. 10, 2024, 2:57 p.m.)
- “Integrative Analysis of Tumor Microenvironment Dynamics in Response to Immune Checkpoint Inhibition” by Zhongyang Lin (Sept. 10, 2024, 2:54 p.m. → Sept. 10, 2024, 2:51 p.m.)
- “Heartbreaking - Resolving Myocardial Infarction at Subcellular Resolution” by Paul Kiessling (Sept. 10, 2024, 3:15 p.m. → Sept. 10, 2024, 3:03 p.m.)
- “Poster session I @ Hof 5” (Sept. 10, 2024, 4 p.m. → Sept. 10, 2024, 3:45 p.m.)
Version 1.3 Aug. 21, 2024
We released a new schedule version!
We have new sessions!
- “BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis”
- “Zoom & Enhance: Enabling Subcellular Analysis of Spatial Transcriptomics with Bento”
- “Fast and accurate cell segmentation of highly multiplexed spatial omics using graph neural networks with segger”
- “scPortrait: Building single cell representations based on microscopy images”
Version 1.2 Aug. 9, 2024
We released a new schedule version!
We have new sessions!
- “SCleeStacks: modality-organized images for containerized development, execution, and analysis”
- “Combinator: A Semi-Supervised Trajectory Inference Algorithm to Track Rare Cell State Transitions in scRNAseq Data”
- “Novae: a graph-based foundation model for spatial transcriptomics data”
- “Spatialproteomics - Streamlining spatial proteomics analysis”
- “Identifying retinal ganglion cell types”
- “Deciphering Intra-Tumoral Heterogeneity and Metastatic Processes in Pancreatic Ductal Adenocarcinoma Using In Situ Sequencing”
- “High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in colorectal cancer”
- “Integrative Analysis of Tumor Microenvironment Dynamics in Response to Immune Checkpoint Inhibition”
- “Heartbreaking - Resolving Myocardial Infarction at Subcellular Resolution”
We sadly had to cancel a session: “Poster Session II @ Hof 5”
We have moved a session around: “Poster session I @ Hof 5” (Sept. 10, 2024, 3:45 p.m. → Sept. 10, 2024, 4 p.m.)
Version 1.1 Aug. 8, 2024
We released a new schedule version!
Version 1.0 Aug. 8, 2024
First schedule of the scverse conference!
We have new sessions!
- “Projections, interactive plots and interactive online documentation of your scRNA project”
- “Marsilea: Declarative creation of composable visualization for Omics data”
- “Higher throughput and fidelity screens with higher accuracy barcode decoding”
- “Unleashing the potential of multiplexed imaging experiments”
- “anndataR: easily interact with anndata in R”
- “Training models on atlas-scale single-cell datasets”
- “User-friendly exploration of (epi)genomic data in single cells using sincei”
- “Data Version Control: the missing link in team science”
- “Polyglot programming for single-cell analysis”
- “NeuroVelo: interpretable learning of temporal cellular dynamics from single-cell data”
- “Analysis of tumor infiltrating lymphocytes in the AML bone marrow”
- “Comprehensive Analysis Integrating Single-Cell Spatial Transcriptomics, Genomics, and Histology in Gastric Cancer”
- “Benchmarking Open Problems in Single Cell Analysis”
- “Scaling immune-cell receptor analysis in scirpy to millions of single cells”
- “DeepSpaCE: A deep learning framework to detect spatial single cell domains”
- “Characterizing cell state heterogeneity in a primary acute myeloid leukemia hierarchy using Single-Cell Proteomics by Mass Spectrometry”
We sadly had to cancel a session: “Avoiding common pitfalls in single-cell analysis – hands-on guide through preprocessing, annotation, and differential expression.” by Mark Sanborn.
We had to move some sessions, so if you were planning on seeing them, check their new dates or locations:
- “Machine learning for regulatory genomics at single-cell resolution” by Christina Leslie (Sept. 11, 2024, 11 a.m. → Sept. 11, 2024, 10:45 a.m.)
- “Closing remarks” by scverse core team (Sept. 12, 2024, 4:40 p.m. → Sept. 12, 2024, 4:30 p.m.)
- “What's new @scverse” by scverse core team (Sept. 10, 2024, 10 a.m. → Sept. 10, 2024, 9:45 a.m.)
- “Towards AI-driven Discoveries in Single-cell Genomics” by Maria Brbic (Sept. 12, 2024, 11 a.m. → Sept. 12, 2024, 10:30 a.m.)
- “Single-cell analysis - dos and don'ts in trajectory inference” by Roshan Sharma (Sept. 11, 2024, 5 p.m. → Sept. 11, 2024, 3:45 p.m.)
- “Opening day 2” (Sept. 11, 2024, 9:30 a.m. → Sept. 11, 2024, 9 a.m.)
- “Many anecdotes make a novel? Study-centered analysis and training models” by Alex Wolf (Sept. 10, 2024, 10:30 a.m. → Sept. 10, 2024, 10:15 a.m.)
- “Get your package ready for the scverse ecosystem + cookiecutter template” by Philipp Angerer, Lukas Heumos (Sept. 11, 2024, 4 p.m., Main conference room - MW 0350 → Sept. 12, 2024, 2 p.m., Workshop room I - MW 0337)
- “Poster session I @ Hof 5” (Sept. 10, 2024, 6 p.m. → Sept. 10, 2024, 3:45 p.m.)
- “Upstream of the single-cell data deluge: On the importance of accurate, efficient, and open methods for preprocessing single-cell data” by Rob Patro (Sept. 10, 2024, 2 p.m. → Sept. 10, 2024, 1:30 p.m.)
- “Sponsor talk : immunai” (Sept. 10, 2024, 3 p.m. → Sept. 10, 2024, 2:15 p.m.)
- “Interactive AnnData & SpatialData analysis” by Luca Marconato (Sept. 12, 2024, 9:30 a.m., Main conference room - MW 0350 → Sept. 11, 2024, 3:45 p.m., Workshop room II - MW 0234)
- “Poster Session II @ Hof 5” (Sept. 10, 2024, 5:30 p.m. → Sept. 10, 2024, 2:45 p.m.)
- “Good first contributions” by Mikaela Koutrouli (Sept. 11, 2024, 4 p.m. → Sept. 12, 2024, 9 a.m.)
- “GPU accelerated single-cell analysis” by Severin Dicks (Sept. 12, 2024, 2:30 p.m. → Sept. 12, 2024, 2 p.m.)
- “Big Data in AnnData” by Ilan Gold (Sept. 12, 2024, 3:30 p.m. → Sept. 12, 2024, 3:15 p.m.)
- “From scanpy to the virtual cell: the coming-of-age of single cell analysis” by Fabian Theis (Sept. 10, 2024, 4 p.m. → Sept. 12, 2024, 11:15 a.m.)
Version 0.2.5 July 22, 2024
We released a new schedule version!
We have moved a session around: “Machine learning for regulatory genomics at single-cell resolution” by Christina Leslie (Sept. 11, 2024, 9:45 a.m. → Sept. 11, 2024, 11 a.m.)
Version 0.2.4 July 18, 2024
We released a new schedule version!
Version 0.2.3 July 18, 2024
We released a new schedule version!
We have a new session: “GPU accelerated single-cell analysis” by Severin Dicks .
Version 0.2.2 July 17, 2024
We released a new schedule version!
We have moved a session around: “Sponsor talk : immunai” (Sept. 10, 2024, 3:05 p.m. → Sept. 10, 2024, 3 p.m.)
Version 0.2.1 July 15, 2024
We released a new schedule version!
We have moved a session around: “Interactive AnnData & SpatialData analysis” by Luca Marconato (Sept. 11, 2024, 4 p.m., Workshop room II - MW 0234 → Sept. 12, 2024, 9:30 a.m., Main conference room - MW 0350).
Version 0.2 July 15, 2024
We released a new schedule version!
We have new sessions!
- “Get your package ready for the scverse ecosystem + cookiecutter template”
- “Good first contributions”
- “Interactive AnnData & SpatialData analysis”
We had to move some sessions, so if you were planning on seeing them, check their new dates or locations:
- “Single-cell analysis - dos and don'ts in trajectory inference” by Roshan Sharma (Sept. 11, 2024, 4 p.m. → Sept. 11, 2024, 5 p.m.)
- “Avoiding common pitfalls in single-cell analysis – hands-on guide through preprocessing, annotation, and differential expression.” by Mark Sanborn (Main conference room - MW 0350 → Workshop room I - MW 0337)
Version 0.1 July 9, 2024
We released our first schedule!