Avoiding common pitfalls in single-cell analysis – hands-on guide through preprocessing, annotation, and differential expression.
Mark Sanborn
This live coding workshop is an introduction to preprocessing and the core analyses of single-cell sequencing. We will focus on the best practices while avoiding pitfalls that are commonly missed or leftover from earlier single-cell recommendations. We will briefly cover background correction, outlier filtering, transformation, and integration. The emphasis of this workshop will be annotation, differential expression, and pathway analysis. Each attendee will have access to a dataset and optional analysis environment.
Workshops
Main conference room - MW 0350