Roshan Sharma
Manager, Computational Biology at Single-cell Analytics and Innovation Lab, MSKCC
Sessions
09-11
17:00
60min
Single-cell analysis - dos and don'ts in trajectory inference
Roshan Sharma
We will use Scanpy to discuss some of the basic pre-processing of single-cell data, and transition to discuss common trajectory methods. Major emphasis of the workshop will be on guidelines for trajectory detection - things a user is recommended to keep in mind when doing such analyses. We will provide example code (with Palantir and CellRank) and illustrations. All code used will be made publicly available.
Workshops
Main conference room - MW 0350